The crystallographic information file cif is the internationally agreed standard file format for information exchange in crystallography. Mercury can also be downloaded free of charge from the mercury download page. Chocolatey is trusted by businesses to manage software deployments. Mercury offers a comprehensive range of tools for 3d structure visualisation and the exploration of crystal packing. The software handling one part of structure solution must be automatically linked to software handling parts upstream and downstream of it in the. Vega was developed to create a bridge between most of the molecular software packages, like quantacharmm, insight ii, mopac, biodock, etc. The new standard application for solving, refining and finishing smallmolecule crystal structures. How to use the crystallography open database cod to search for and download crystal structure information including cif files. Fabio fabio is a python module written for easy and transparent reading of raw twodimensional data from various xray detectors. Phaser is a platform for future development of improved phasing methods and their release, including source code, to the crystallographic community. The data base includes a copy of mercury with all features fully enabled. Diamond is distributed as a selfextracting executable file setup.
Structures deposited with cambridge crystallographic data centre ccdc are publicly available for download at the point of publication or at consent from the depositor. Anaelu software package anaelu analytical emulator laue utility has been created for aiding the interpretation of twodimensional xray diffraction patterns produced by textured bulk and nanostructured samples. Find cambridge crystallographic data centre software downloads at cnet, the most comprehensive source for safe, trusted, and spywarefree downloads on the web. The software handling one part of structure solution must be automatically linked to software handling parts upstream and downstream of it in the structure solution pathway with ideally no user input, and the algorithms implemented in the software must be of high quality, so that the. The mercury and hermes software from the ccdc contain interfaces to the csd python api that allow direct access to api scripts from within these programs. Mercury provides an extensive array of options to aid the investigation. A style manager contains a number of predefined display styles. Please use one or more of the boxes to find entries. Ccsd mercury the cambridge crystallographic data centre ccdccrystal structure database csd has a free structure viewer called mercury. Demonstration versions of the software are available for free download, and the full version may be ordered from the site.
How to install cambridge crystallographic data centre for. Productivity software educational software developer tools business software. Xray crystallography software crystallography and chemistry databases 1. The python interfaces open the capability of using any feature of the api inside these guis. The following needs to be downloaded from ucl software database. The app is developed by the cambridge crystallographic data centre. This guide explains how to install cambridge crystallographic data centre. Ajust performs wholepattern matching cellparameter refinement, profile fitting and intensity extraction, sgaid provides a list of the most probable space groups. If you hold a current csds licence further features can be accessed by registering mercury. If you hold a current csds licence further features can.
The csd is a widely used repository for smallmolecule organic and metalorganic crystal structures for scientists. Mercury is available as a free download with more advanced mercury features and exploration of the full cambridge structural database csd available with a. Using the csd python api with mercury and hermes csd. It is thus used primarily for either research or learning, providing users with a fullfeatured environment for exploring and constructing accurate crystal structures for educational purposes. Download deposited data cross platform synthesis, structure, and catalytic studies of palladium and. A crystallographic database is a database specifically designed to store information about the structure of molecules and crystals. In order to download this version of mercury, you must first read and accept the terms of the following licence agreement. The cambridge crystallographic data centre ccdccrystal structure database csd has a free structure viewer called mercury. Jul 31, 2017 mercury provides an extensive array of options to aid the investigation and analysis of crystal structures. Sdp for windows complete crystallographic software package for small molecule structures, including data reduction, structure solution and refinement, calculation of derived parameters, realtime interactive graphics, presentation graphics and preparation of text and tables for publication. Get the most out of your diffraction data with olexsys dont diffract without us.
Educational software developer tools business software productivity software. Mercury the program is a work of the cambridge crystallographic data centre ccdc and its licensors. Crystals are solids having, in all three dimensions of space, a regularly repeating arrangement of atoms, ions, or molecules. We spend countless hours researching various file formats and software that can open, convert, create or otherwise work with those files. Cambridge structural database csd is a world wide repository of small molecule crystal structures hosted by cambridge crystallographic data center ccdc. Oct 18, 2018 mercury offers a comprehensive range of tools for structure visualisation, the exploration of crystal packing and statistical analysis of conquest geometric searches. They are also scientifically enriched and included in the database used by software offered by the centre. It is provided with onlinehelp, a user manualtutorial, the crystallography open database cod as well as several sample files the software package provided below can either be. Downloads the cambridge crystallographic data centre ccdc. Crystallographic and theoretical studies of an inclusion complex of. Using the knowledge available amy sarjeant cccw16, saint marys university, halifax ns. Apr 21, 20 free cambridge crystallographic data centre mac version 3. Vesta is a 3d visualization program for structural models and 3d grid data such as electronnuclear densities. This is the page from which demo and commercial versions of several crystallographic software packages can be downloaded or purchased.
Some input files are provided for this class, and instructions for obtaining input files for other materials are at the end of the handout. Mercury offers a comprehensive range of tools for 3d structure visualization and the exploration of crystal packing. The csd is provided by the cambridge structural data centre. Mercury is a free download from the cambridge crystallographic data.
This software is distributed free of charge for academic, scientific, educational, and noncommercial users. Crystallographic software for displaying voxel maps electron density mce is an crystallographic experimental program for 3d and 2d electron density map visualization. Some limited molecularediting capabilities have been added. Welcome to access structures, the ccdcs and fiz karlsruhes free service to view and retrieve structures. Access2020 cambridge structural database research guides. In this tool have been also implemented some features that are useful to analyze, display and manage the 3d structures of molecules. Mercury mercury offers a comprehensive range of tools for 3d structure visualization and the exploration of crystal packing. With a long pedigree and over 10,000 downloads, mercury is firmly established as the visualiser of choice within the crystallographic community. Anaelu is composed of three interconnected applications, corresponding to three crystallographic tasks. Generate packing diagrams, define and visualize miller planes, and take a slices through a crystal in any direction. Users belonging to commercial enterprises may also use this software at no cost until a license for business users is established. This guide explains how to install cambridge crystallographic data centre downloaded from ucl software database. The latest version of the program can be downloaded for pcs running windows xpvista7810, 32bit. Improved crystallographic methods rely on both improved automation and improved algorithms.
The most popular versions among the software users are 3. Here is the 2017 cambridge structural database csd release, with news of data additions, new functionality and underlying improvements. Mercury the cambridge crystallographic data centre ccdc. Our software library provides a free download of mercury 4.
Crystal structure validations and geometrical calculations were performed using the platon software spek, 2009. Mercury is able to load structural data from a variety of formats and provides an extensive array of options to aid the investigation and analysis of crystal structures. Athena, artemis, hephaestus this software package is based on the ifeffit library of numerical and xas algorithms. We have had a sharp focus on quality and usability this year. The software at present there are enough personal, institutional or commercial computer program developments, or even computing facilities through remote servers, to fulfill nearly all of the needs for crystallographic computing, as well as many sources from which one can download most of those programs. The software listed on this page includes copies of, or links to, many of the programs and libraries available for use with cif and star files. Downloading and installing it is pretty straightforward, but still makes for a reasonable post. Empowered with a crystallographic database, crystal studio lets you create stunning photorealistic 3d graphics and diffraction patterns with just a few mouse clicks. The software is mainly focused on visualization of eld calculated from xray diffraction data of.
With a long pedigree and over 10,000 downloads, mercury is firmly established as the. Sep 27, 2017 how to use the crystallography open database cod to search for and download crystal structure information including cif files. If you enter details in more than one field the search will try to find records containing all the terms entered. The software originated at durham university and has been in active development since 2004. Mercury crystal structure visualisation, exploration and analysis made easy. The software is mainly focused on visualization of eld calculated from xray diffraction data of small molecules, but it will work for small proteins as well. Crystallographic and theoretical studies of an inclusion. It is a perfect match for science in the education category. Free cambridge crystallographic data centre mac version 3. The module provides a function for reading any image and returning a fabioimage object which contains both metadata header information and the raw data. Introduction improved crystallographic methods rely on both improved automation and improved algorithms. Cambridge structural database system, open the start menu and search for mercury 6. Mercury is available as a free download with more advanced mercury features and exploration of the full cambridge structural database csd available with a csd licence. Find cambridge crystallographic data centre software downloads at cnet download.
The latest version of mercury is only distributed with encifer 1. Band structure explore the origin of energy bands in crystals of atoms. Expert crystallographic training and services to carry your structures from diffraction through to publication. The mercury application comes from the cambridge crystallographic data centre, and it is used for visualizing and analyzing crystallographic structures. How to install cambridge crystallographic data centre for windows. Mar 07, 2020 mercury offers a comprehensive range of tools for 3d structure visualization and the exploration of crystal packing. Chocolatey is software management automation for windows that wraps installers, executables, zips, and scripts into compiled packages. In order to download this version of mercury, you must first read and accept the terms of the licence agreement. Macromolecular crystallographic software links ccp4 cns phenix eden crystallography coot o macros for o uppsala software factory pymol home page sharp mosflm other useful crystallography links crystallography on os x xray absorption edges the protein data bank pdb molecular movies data base nucleic acid databank international tables ccp4.1118 1548 781 853 1030 686 747 944 509 34 1241 64 811 1065 398 1395 869 1270 8 3 627 1399 1061 73 1262 351 772 753 501 287 46 1048 1331 1221